Chemical-reactivity profiling

Isotope-coded dansylation for comparative metabolomics

Pair light and heavy chemical labels to quantify amine- and phenol-containing metabolites by LC-MS.

Analytical Chemistry · 2009 · 10.1021/ac900166a

LC-MSMetabolite profilingChemical-reactivity profiling

What does this strategy enable?

Differential dansylation couples selective chemical tagging with coeluting isotope pairs. Sample-to-reference signal ratios support comparative quantification; labeled standards enable calibrated measurements.

Transferable workflow

Workflow

  1. 1

    Label samples and reference

    React compatible metabolites with light or heavy dansyl reagents.

  2. 2

    Mix labeled material

    Combine labeled sample with reference material or calibrated standards.

  3. 3

    Separate and measure isotope pairs

    Analyze coeluting pairs by LC-MS.

  4. 4

    Calculate comparative abundances

    Use pair ratios and appropriate calibration for the intended measurement.

Evidence of reuse

Published implementations and adaptations

These papers applied, adapted, extended, benchmarked or formalized the Strategy after its originating publication. They are examples of precedent, not a ranking of software choices.

Application · Journal of the American Society for Mass Spectrometry · 2011

Qualitative Metabolome Analysis of Human Cerebrospinal Fluid by 13C-/12C-Isotope Dansylation Labeling Combined with Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Application of isotope dansylation to cerebrospinal-fluid profiling; the sample matrix does not define a new Strategy.

doi:10.1007/s13361-010-0033-4

Strategy profile

Components

Sample preparation, Chromatography, Data acquisition, Statistical analysis

Scope and considerations

Designed for

  • Comparative profiling of chemically reactive amines and phenols.

Important requirements

  • Compatible derivatization chemistry, labeled reference material and LC-MS.

Considerations

  • Chemical isotope tags do not measure biological isotope incorporation or metabolic flux.
  • Coverage is restricted by reactive functional groups; isotope pairs alone do not confirm structure.

Reusable resources

✓ Published method available

Publication

Guo K, Li L. Differential 12C-/13C-Isotope Dansylation Labeling and Fast Liquid Chromatography/Mass Spectrometry for Absolute and Relative Quantification of the Metabolome. Analytical Chemistry 81, 3919–3932 (2009).

doi:10.1021/ac900166a