Preprocessing and feature extraction

OpenChrom

Inspect and process chromatographic and mass-spectrometric data in a desktop workbench.

GC-MSDesktop graphical interfaceOpen source

Overview

OpenChrom provides an extensible graphical environment for chromatogram visualization, signal processing and analytical data exchange, with a strong GC-MS heritage.

What can this tool do?

Peak or feature detection

Common uses

  • Review chromatograms interactively.
  • Build processing workflows using compatible extensions.

Scientific fit

Primary function

Preprocessing and feature extraction

Data compatibility

Inputs

Raw instrument data, Mass spectra

Outputs

Mass spectra, Human-readable report

Input formats

Other, Chromatogram files via installed import plug-ins

Output formats

Other, Processed chromatograms and analysis reports

Scope and considerations

Designed for

  • Review chromatograms interactively.

Not designed for

  • Assuming that every vendor format or extension is included in the core installation.

Important requirements

  • A desktop installation with the appropriate import and processing plug-ins.

Considerations

  • Confirm plug-in availability and format support before selecting the tool for an instrument workflow.

Access and documentation

Open-source core; check separate terms for commercial extensions.

Evidence and review

Documentation-based editorial review on 7 September 2026. Scope and limitations summarize the linked official sources; software execution and developer verification were not assessed.

Core publications

Resource papers, direct updates and tool-specific methods. Selection policy.

  1. Wenig P, Odermatt J. OpenChrom: a cross-platform open source software for the mass spectrometric analysis of chromatographic data. BMC Bioinformatics 11, 405 (2010). doi:10.1186/1471-2105-11-405

Related tools

Entry history

Changes to this catalogue entry, not the tool's software release history. Acceptance and editorial review are separate.

  1. 2026-09-08 · Entry update

    Audit core publications across existing tools

    View change · Entry at this revision
  2. 2026-09-07 · First committed entry

    Add 50 documented metabolomics resources

    View change · Entry at this revision

Full GitHub history