Connecting MS metabolomics with biosynthesis
Relate microbial MS signals to biosynthetic hypotheses.
How to choose a resource
Paired microbial genomics and MS metabolomics can prioritize links between gene clusters and detected metabolites. Predicted links and experimentally characterized reference records provide different kinds of evidence.
Start with matched strain identifiers and processed MS networks. Keep software and reference-data versions explicit, and plan experimental follow-up for proposed biosynthetic links.
Tools & resources
2 entriesNPLinker
Open sourceRanks candidate links between microbial biosynthetic gene clusters and MS metabolomics spectra or molecular families using paired strain data.
Rank candidate gene-cluster and MS-feature linksMIBiG
Free web serviceCurated biosynthetic gene-cluster and product references for interpreting MS-based natural-product and metabologenomics results.
Inspect characterized biosynthetic references