Overview
MRMQuant provides a MATLAB graphical interface for MRM peak integration, calibration-based quantification and manual review of targeted measurements.
What can this tool do?
Common uses
- Quantify targeted metabolites from MRM chromatograms.
Scientific fit
Primary function
Quantification and targeted analysis
Analysis types
Targeted metabolomics
Data compatibility
Inputs
Mass spectra, Compound list or annotations
Outputs
Feature or peak table, Human-readable report
Input formats
MRM mzML or text files and a target transition/retention-time list
Output formats
Quantitation results and reloadable MATLAB MAT analysis files
Scope and considerations
Designed for
- MRMQuant provides a MATLAB graphical interface for MRM peak integration, calibration-based quantification and manual review of targeted measurements.
Not designed for
- Untargeted structure discovery from arbitrary MS/MS data.
Important requirements
- MRM measurements and target precursor/product m/z, retention times and tolerances.
- Known-concentration standards for absolute quantification; suitable controls for optional correction.
Considerations
- Review integration, coelution and calibration fits; automated results do not replace assay validation.
Access and documentation
Source and distributions are publicly available. An explicit software license was not identified in the reviewed repository; the paper describes the tool as open source, but reuse terms should be confirmed.
Evidence and review
Enveda intake candidate checked against official documentation, license information and primary publication on 2026-10-21. Editorial review only; no execution or independent benchmark.
Core publications
Resource papers, direct updates and tool-specific methods. Selection policy.
- MRMQuant: Automated MRM Data Quantitation for Large-Scale Targeted Metabolomics Analysis. Analytical Chemistry (2024). doi:10.1021/acs.analchem.4c02462
Related tools
Entry history
Changes to this catalogue entry, not the tool's software release history. Acceptance and editorial review are separate.
- 2026-10-21 · First committed entry
Add nine reviewed Enveda tools and reconcile intake coverage
View change · Entry at this revision